- FAO. FAOSTAT: Crops Data. Available at: http://www.fao.org/faostat/en/#data/QC (Accessed
April 10, 2018). 2. FAO. Potato world: Asia and Oceania. Available at: http://www.fao.org/potato-2008/en/world/ asia.html (Accessed March 13, 2018). 3. Motyka A, Zoledowska S, Sledz W, Lojkowska E. Molecular methods as tools to control plant diseases caused by Dickeya and Pectobacterium spp: A minireview. N Biotechnol. 2017; 39: 181-189. 4. Adeolu M, Alnajar S, Naushad S, Gupta RS. Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int J Syst Evol Microbiol. 2016; 66(12): 5575-5599. 5. Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow MA, Verdier V, emphasized the need for re-evaluation and pathology. Mol Plant Pathol. 2012; 13(6): 614-629. 6. Czajkowski R, Pérombelon MC, Jafra S, Lojkowska E, Potrykus M, Van Der Wolf JM, Sledz W. Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review. Ann Appl Biol. 2015; 166(1): 18-38. 7. Bahar M, Danesh D, 1986. Occurrence of potato black leg in lsfahan. Proceedings of the 8th Plant Protection Congress. Esfehan, Iran. 105. 8. Akramipour N, Abdollahi M, Taghavi SM, Rezaei R. Genetic diversity of some isolates of soft rot Pectobacterium, from different host plants in Fars province, Iran, using RAPD marker. J Pure Appl Microbiol. 2016; 10(3): 1825-1834. 9. Baghaee-Ravari S, Rahimian H, Shams-Bakhsh M, Lopez-Solanilla E, Antúnez-Lamas M, Rodríguez-Palenzuela P. Characterization of Pectobacterium species from Iran using biochemical and molecular methods. Eur J Plant Pathol. 2011; 129(3): 413-425. 10. Baghaee-Ravari S, Gerayeli N. Detection of Pectobacterium carotovorum subsp. carotovorum associated with bacterial soft rot of two succulent plants in Iran using recA and pmrA genes. J Plant Pathol. 2015; 97(1): 143-148. 11. Tavasoli E, Marefat AR, Hassanzadeh N. Identity and genetic diversity of Pectobacterium spp., causal agents of potato soft rot in Zanjan, Iran. Afr J Plant Sci. 2011; 5(6): 329-336. 12. Rahmanifar B, Hasanzadeh N, Razmi J, Ghasemi A. Genetic diversity of Iranian potato soft rot bacteria based on polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis. Afr J Biotechnol. 2012; 11(6): 1314-1320. 13. Dahaghin L, Shams-Bakhsh M. Identification and genetic diversity of pectolytic phytopathogenic bacteria of mono-and dicotyledonous ornamental plants in Iran. J Plant Pathol. 2014; 96(2): 271-279. 14. Terta M, Azelmat S, M’hand RA, Achbani EH, Barakate M, Bouteau F, Ennaji MM. Molecular typing of Pectobacterium carotovorum isolated from potato tuber soft rot in Morocco. Ann Microbiol. 2012; 62(4): 1411-1417. 15. Degefu Y, Potrykus M, Golanowska M, Virtanen E, Lojkowska E. A new clade of Dickeya spp. plays a major role in potato blackleg outbreaks in North Finland. Ann Appl Biol. 2013; 162(2): 231-241. 16. van der Merwe JJ, Coutinho TA, Korsten L, van der Waals JE. Pectobacterium carotovorum subsp. brasiliensis causing blackleg on potatoes in South Africa. Eur J Plant Pathol. 2010; 126 (2): 175-185. 17. Nabhan S, Wydra K, Linde M, Debener T. The use of two complementary DNA assays, AFLP and MLSA, for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum. Plant Pathol. 2012; 61 (3): 498-508. 18. Versalovic J, Schneider M, De Bruijn FJ, Lupski JR. Genomic fingerprinting of bacteria using
repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol. 1994; 5(1): 25-40. 19. Golanowska M, Lojkowska E. A review on Dickeya solani, a new pathogenic bacterium causing loss in potato yield in Europe. Bio Technologia. 2016; 97(2): 109-127. 20. Suárez MB, Feria FJ, Martín-Robles MJ, del Rey FJ, Palomo JL. Pectobacterium parmentieri causing soft rot on potato tubers in southern Europe. Plant Dis. 2017; 101(6): 1029. 21. Gallois A, Samson R, Ageron E, Grimont PA. Erwinia carotovora subsp. odorifera subsp. nov., associated with odorous soft rot of chicory (Cichorium intybus L.). Int J Syst Evol Microbiol. 1992; 42(4): 582-588. 22. Gardan L, Gouy C, Christen R, Samson R. Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov. Int J Syst Evol Microbiol. 2003; 53(2): 381-391. 23. Schaad NW, Jones JB, Chun W. Laboratory guide for the identification of plant pathogenic bacteria. APS Press; 2001. 24. De Bruijn FJ, Rademaker J, Schneider M, Rossbach U, Louws FJ. Rep-PCR genomic fingerprinting of plant-associated bacteria and computer-assisted phylogenetic analyses. In: Stacey G, Mullin B, Gresshoff P, editors. Proceedings of the 8th International Congress of Molecular Plant-Microbe Interactions. St. Paul, APS Press; 1996: 497-502. 25. Sambrook J, Russell DW. Gel electrophoresis of DNA and pulsed-field agarose gel electrophoresis. In: Molecular cloning: a laboratory manual. 3rd ed. New York. Cold Spring harbor Laboratory Press; 2001: 5.4-5.17. 26. Huson DH, Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006; 23(2): 254-267. 27. Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Resour. 2007; 7(4): 574-578. 28. Bryant D, Moulton V. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol. 2004; 21(2): 255-265. 29. Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online. 2005; 1: 47-50 30. Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 1992; 131(2): 479-491. 31. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 1978; 89(3): 583-590. 32. Holt JG, Krieg NR, Sneath Pa, Staley JT, Williams ST. Bergey's Manual of determinate bacteriology. Williams and Wilkins Publishers; 1994. 33. Khayi S, Cigna J, Chong TM, Quêtu-Laurent A, Chan KG, Hélias V, Faure D. Transfer of the
potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov. Int J Syst Evol Microbiol. 2016; 66(12): 5379-5383. 34. Zohour Paralak E, Rahimian H, Banihashemi Z. A comparative study on pectolytic Erwinias isolated from potato in the Fars province. Iran. J Plant Pathol. 2007; 43: 121-144. 35. Ahmadvand R, Rahimian H. 2002. Study on diversity of the pectolytic Erwinias infecting potato in Hamedan province. Proceedings of the 15th Iranian Plant Protection Congress, 7–11 Sep, Kermanshah, Iran, 115. 36. Houle D, Govindaraju DR, Omholt S. Phenomics: the next challenge. Nat Rev Genet. 2010; 11(12): 855-866. 37. Duarte V, De Boer SH, Ward LJ, Oliveira AM. Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil. J Appl Microbiol. 2004; 96(3): 535-545. 38. Costa AB, Eloy M, Cruz L, Janse JD, Oliveira H. Studies on pectolytic Erwinia spp. in Portugal reveal unusual strains of E. carotovora subsp. atroseptica. J Plant Patho. 2006; 88(2): 161-169. 39. Vimal BM, Anuradha SN. Characterization and differentiation of soft rot causing Pectobacterium carotovorum of Indian origin. Eur J Plant Pathol. 2013; 136(1): 87-102. 40. Yap MN, Barak JD, Charkowski AO. Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence. Appl Environ Microbiol. 2004; 70(5): 3013-3023. 41. Faquihi H, Terta M, Amdan M, Achbani EH, Ennaji MM, Mhand RA. Phenotypic and genotypic diversity of Pectobacterium carotovorum subsp. carotovorum causing soft rot disease of potatoes in Morocco. Eur J Plant Pathol. 2015; 143(4): 801-811. 42. Baghaee-Ravari S, Moslemkhani K, Khodaygan P. Assessment of genetic variability of prevalent pectinolytic bacteria causing potato tuber soft rot in eastern Iran. J Plant Pathol. 2013; 95(1): 107-113. 43. Dees MW, Lysøe E, Rossmann S, Perminow J, Brurberg MB. Pectobacterium polaris sp. nov., isolated from potato (Solanum tuberosum). Int J Syst Evol Microbiol. 2017; 67(12): 5222-5229.
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